Accurate prediction of the statistics of repetitions in random sequences: a case study in Archaea genomes

Mireille Regnier (1, 2) , Philippe Chassignet (2, 1)

1 AMIB - Algorithms and Models for Integrative Biology
2 LIX - Laboratoire d'informatique de l'École polytechnique [Palaiseau]

Mots clés: probability; combinatorics; kmers; sequence; repeats; trie

Domaines: Bio-informatique [q-bio.QM]

Mireille Regnier, Philippe Chassignet. Accurate prediction of the statistics of repetitions in random sequences: a case study in Archaea genomes. Frontiers in Bioengineering and Biotechnology, 2016, 4, ⟨10.3389/fbioe.2016.00035⟩. ⟨hal-01304366⟩