AgroLD indexing tools with ontological annotations

Stella Zevio (1) , Nordine El Hassouni (2) , Manuel Ruiz (1, 2, 3) , Pierre Larmande (1, 4, 5)

1 IBC - Institut de Biologie Computationnelle
2 UMR AGAP - Amélioration génétique et adaptation des plantes méditerranéennes et tropicales
3 Cirad-BIOS - Département Systèmes Biologiques
4 ZENITH - Scientific Data Management
5 UMR DIADE - Diversité, adaptation, développement des plantes

The Agronomic Linked Data project (AgroLD) is a Semantic Web knowledge base designed to integrate data from various publicly available plant centric data sources. The aim of AgroLD project is to provide a portal for bioinformaticians and domain experts to exploit the homogenized data towards enabling to bridge the knowledge. Here we present new tools that enable " full text search " functionalities with Elastic clusters and enhance data annotation with ontologies.

Mots clés: Linked Data; Elastic; Plant Molecular Biology

Domaines: Bio-informatique [q-bio.QM]

Stella Zevio, Nordine El Hassouni, Manuel Ruiz, Pierre Larmande. AgroLD indexing tools with ontological annotations. SWAT4LS: Semantic Web Applications and Tools for Life Sciences, Dec 2016, Amsterdam, Netherlands. , 11th Internationale Conference on Semantic Web Applications and Tools for Healthcare and Life Sciences, 2016. ⟨hal-01411713⟩