Formalization of the neuro-biological models for spike neurons.

Lucas Ferro (1) , Charf-Eddin M'Sakni (1) , Pierre Repetto (1) , Nader Salman (1) , Manh-Tien Nguyen (1) , Thierry Viéville (1)

1 ODYSSEE - Computer and biological vision

When modelizing cortical neuronal maps (here spiking neuronal networks) within the scope of the FACETS project, researchers in neuro-science and computer-science use NeuroML, a XML language, to specify biological neuronal networks. These networks could be simulated either using analogue or event-based techniques. Specifications include : - parametric model specification - model equation symbolic definition - formalization of related semantic aspects (paradigms, ..) and they are used by "non-computer-scientists". In this context XML is used to specify data structures, not documents. The first version of NeuroML uses Java to map XML biological data which can be later simulated within GENESIS, NEURON, etc. The second version uses tools for handling XML data, as XSL, to transform an XML file. To allow NeuroML to be used intensively within the scope of the FACETS project, we will entirely analyse the software. First we are going to evaluate this software deeply in the Technical Report section. Then we will propose a prototype to write down NeuroML code easily.

Mots clés: NeuroML; Biological Neurons; Spiking Neurons; Neural Networks Simulation

Domaines: Base de données [cs.DB]

Lucas Ferro, Charf-Eddin M'Sakni, Pierre Repetto, Nader Salman, Manh-Tien Nguyen, et al.. Formalization of the neuro-biological models for spike neurons.. [Technical Report] RT-0324, INRIA. 2006, pp.110. ⟨inria-00080566v2⟩