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hal-03048725
v4
Journal articles
Augustin Chevallier
,
Sylvain Pion
,
Frédéric Cazals
.
Improved polytope volume calculations based on Hamiltonian Monte Carlo with boundary reflections and sweet arithmetics
Journal of Computational Geometry
, Carleton University, Computational Geometry Laboratory, In press,
⟨10.20382/jocg.v13i1a3⟩
hal-02484814
v1
Preprints, Working Papers, ...
Frédéric Cazals
,
Bernard Delmas
,
Timothée O'Donnell
.
Fréchet mean and p-mean on the unit circle: characterization, decidability, and algorithm
2020
hal-01245395
v1
Journal articles
Frédéric Cazals
,
Tom Dreyfus
,
Dorian Mazauric
,
Andrea Roth
,
Charles H. Robert
.
Conformational Ensembles and Sampled Energy Landscapes: Analysis and Comparison
Journal of Computational Chemistry
, Wiley, 2015, 36, 6, pp.18
hal-01076317
v3
Reports
Frédéric Cazals
,
Tom Dreyfus
,
Dorian Mazauric
,
Andrea Roth
,
Charles H. Robert
.
Conformational Ensembles and Sampled Energy Landscapes: Analysis and Comparison
[Research Report] RR-8610, INRIA. 2014
hal-00849827
v1
Book sections
Frédéric Cazals
,
Tom. Dreyfus
,
Charles H. Robert
.
Modeling Macro-molecular Complexes : a Journey Across Scales
Cazals, Frédéric and Kornprobst, Pierre.
Modeling in Computational Biology and Medicine: : A Multidisciplinary Endeavor
, Springer, pp.3-45, 2012, 978-3-642-31207-6 (Print) ; 978-3-642-31208-3 (Online).
⟨10.1007/978-3-642-31208-3_1⟩
hal-01498027
v1
Journal articles
Frédéric Cazals
,
Christine--Andrea Roth
,
Tom Dreyfus
,
Dorian Mazauric
,
Charles H. Robert
.
Conformational ensembles and sampled landscapes: analysis and comparison
Journal of Computational Chemistry
, Wiley, 2015, 36, pp.1213--31.
⟨10.1002/jcc.23913⟩
hal-01497994
v1
Journal articles
Christine A. Roth
,
Tom Dreyfus
,
Charles H. Robert
,
Frédéric Cazals
.
Hybridizing Rapidly Exploring Random Trees and Basin Hopping Yields an Improved Exploration of Energy Landscapes
Journal of Computational Chemistry
, Wiley, 2016, 37, pp.752.
⟨10.1002/jcc.24256⟩
hal-01498079
v1
Book sections
Frédéric Cazals
,
Tom Dreyfus
,
Charles H. Robert
.
Modeling macromolecular complexes: a journey across scales
Modeling in Computational Biology and Biomedicine: A Multidisciplinary Endeavor
, Springer-Verlag Berlin Heidelberg, 2013
hal-01191028
v1
Reports
Christine--Andrea Roth
,
Tom Dreyfus
,
Charles H. Robert
,
Frédéric Cazals
.
Hybridizing rapidly growing random trees and basin hopping yields an improved exploration of energy landscapes
[Research Report] RR-8768, Inria. 2015, pp.29
hal-01423282
v1
Journal articles
Andrea Roth
,
Tom Dreyfus
,
Charles H. Robert
,
Frédéric Cazals
.
Hybridizing rapidly growing random trees and basin hopping yields an improved exploration of energy landscapes
Journal of Computational Chemistry
, Wiley, 2016, 37 (8), pp.14
inria-00559117
v2
Reports
Frédéric Cazals
,
Tom Dreyfus
.
Assessing the Reconstruction of Macro-molecular Assemblies: the Example of the Nuclear Pore Complex
[Research Report] RR-7513, INRIA. 2011
hal-02425599
v1
Journal articles
Frédéric Cazals
,
Dorian Mazauric
,
Romain Tetley
,
Rémi Watrigant
.
Comparing Two Clusterings Using Matchings between Clusters of Clusters
ACM Journal of Experimental Algorithmics
, Association for Computing Machinery, 2019, 24 (1), pp.1-41.
⟨10.1145/3345951⟩
hal-00741491
v3
Reports
Deepesh Agarwal
,
Frédéric Cazals
,
Noël Malod-Dognin
.
Stoichiometry Determination for Mass-spectrometry Data: the Interval Case
[Research Report] RR-8101, INRIA. 2013, pp.52
inria-00497688
v1
Reports
Frédéric Cazals
,
Tom Dreyfus
.
Multi-scale Geometric Modeling of Ambiguous Shapes with Toleranced Balls and Compoundly Weighted alpha-shapes
[Research Report] RR-7306, INRIA. 2010, pp.32
hal-01379635
v1
Reports
Frédéric Cazals
,
Tom Dreyfus
.
The Structural Bioinformatics Library: modeling in biomolecular science and beyond
[Research Report] RR-8957, Inria. 2016
hal-00777892
v1
Reports
Frédéric Cazals
,
Tom Dreyfus
,
Sushant Sachdeva
,
Shah Nisarg
.
Greedy Geometric Optimization Algorithms for Collection of Balls
[Research Report] RR-8205, INRIA. 2013, pp.26
hal-00796105
v1
Conference papers
Frédéric Cazals
,
Tom Dreyfus
.
Assessing the Stability of Protein Complexes within Large Assemblies
ISMB Satellite Meeting on Structural Bioinformatics and Computational Biophysics - 2009
, ISCB, Jun 2009, Stockholm, Sweden. 3 p
hal-01514872
v4
Reports
Frédéric Cazals
,
Dorian Mazauric
,
Romain Tetley
,
Rémi Watrigant
.
Comparing two clusterings using matchings between clusters of clusters
[Research Report] RR-9063, INRIA Sophia Antipolis - Méditerranée; Universite Cote d'Azur. 2017, pp.1-45
hal-00849795
v1
Journal articles
Tom Dreyfus
,
Valérie Doye
,
Frédéric Cazals
.
Probing a Continuum of Macro-molecular Assembly Models with Graph Templates of Sub-complexes
Proteins - Structure, Function and Bioinformatics
, Wiley, 2013,
⟨10.1002/prot.24313⟩
hal-00796092
v1
Journal articles
Sebastien Loriot
,
Sushant Sachdeva
,
Karine Bastard
,
Chantal Prevost
,
Frédéric Cazals
.
On the Characterization and Selection of Diverse Conformational Ensembles, with Applications to Flexible Docking
IEEE/ACM Transactions on Computational Biology and Bioinformatics
, Institute of Electrical and Electronics Engineers, 2011, 8 (2), pp.487-498.
⟨10.1109/TCBB.2009.59⟩
inria-00252046
v3
Reports
Sebastien Loriot
,
Sushant Sachdeva
,
Karine Bastard
,
Chantal Prevost
,
Frédéric Cazals
.
On the Characterization and Selection of Diverse Conformational Ensembles, with Applications to Flexible Docking
[Research Report] RR-6503, INRIA. 2009
inria-00070393
v2
Reports
Frédéric Cazals
,
Chinmay Karande
.
Reporting maximal cliques: new insights into an old problem
[Research Report] RR-5615, INRIA. 2006, pp.25
inria-00510092
v1
Conference papers
Frédéric Cazals
,
Claude Puech
.
Bucket-like space partitioning data structures with applications to ray-tracing
13th ACM Symposium on Computational Geometry
, 1997, Nice, France
inria-00071995
v1
Reports
Vincent Borrelli
,
Frédéric Cazals
,
Jean-Marie Morvan
.
On the angular defect of triangulations and the pointwise approximation of curvatures
RR-4590, INRIA. 2002
inria-00071912
v1
Reports
Frédéric Cazals
,
F. Chazal
,
T. Lewiner
.
Molecular Shape Analysis based uponthe Morse-Smale Complexand the Connolly Function
RR-4673, INRIA. 2002
inria-00070609
v1
Reports
Frédéric Cazals
,
Joachim Giesen
,
Mariette Yvinec
.
Delaunay Triangulation Based Surface Reconstruction : a short survey
RR-5394, INRIA. 2004, pp.12
hal-00103023
v1
Journal articles
Frédéric Cazals
,
Marc Pouget
.
Differential topology and geometry of smooth embedded surfaces: selected topics
International Journal of Computational Geometry and Applications
, World Scientific Publishing, 2005, Vol. 15, No. 5, pp.511-536.
⟨10.1142/S0218195905001816⟩
inria-00070365
v1
Reports
Frédéric Cazals
,
Chinmay Karande
.
An algorithm for reporting maximal c-cliques
[Research Report] RR-5642, INRIA. 2006, pp.10
inria-00118781
v4
Reports
Frédéric Cazals
,
Sebastien Loriot
.
Computing the exact arrangement of circles on a sphere, with applications in structural biology
[Research Report] RR-6049, INRIA. 2007, pp.56
inria-00344962
v1
Conference papers
Frédéric Cazals
,
Aditya Parameswaran
,
Sylvain Pion
.
Robust Construction of the Three-Dimensional Flow Complex
ACM Symposium on Computational Geometry (SCG)
, Jun 2008, Washington, United States
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