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	hal-00828854v1 Journal articles Camillo La Rota, Jérôme Chopard, Pradeep Das, Sandrine Paindavoine, Frédérique Rozier et al. A data-driven integrative model of sepal primordium polarity in Arabidopsis The Plant cell, American Society of Plant Biologists (ASPB), 2011, 23 (12), pp.4318-433. ⟨10.1105/tpc.111.092619⟩
	inria-00191126v3 Reports Christophe Pradal, Frédéric Boudon, Christophe Nouguier, Jérôme Chopard, Christophe Godin. PlantGL : a Python-based geometric library for 3D plant modelling at different scales [Research Report] RR-6367, INRIA. 2007
	hal-00941028v1 Journal articles Daniele Muraro, Nathan Mellor, Michael P. Pound, Hanna Help, Mikaël Lucas et al. Integration of hormonal signaling networks and mobile microRNAs is required for vascular patterning in Arabidopsis roots Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences, 2014, 111 (2), pp.857-862. ⟨10.1073/pnas.1221766111⟩
	hal-01142486v1 Journal articles Frédéric Boudon, Jérôme Chopard, Olivier Ali, Benjamin Gilles, Olivier Hamant et al. A Computational Framework for 3D Mechanical Modeling of Plant Morphogenesis with Cellular Resolution PLoS Computational Biology, Public Library of Science, 2015, 11 (1), pp.1-16. ⟨10.1371/journal.pcbi.1003950⟩
	hal-00412857v1 Journal articles Szymon Stoma, M. Lucas, Jérôme Chopard, Marianne Schaedel, Jan Traas et al. Flux based transport enhancement as a plausible unifying mechanism for Auxin transport in meristem development PLoS Computational Biology, Public Library of Science, 2008, 4 (10), pp.1000207. ⟨10.1371/journal.pcbi.1000207⟩
	hal-01516082v1 Journal articles Sarah Cohen-Boulakia, Khalid Belhajjame, Olivier Collin, Jérôme Chopard, Christine Froidevaux et al. Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities Future Generation Computer Systems, Elsevier, 2017, 75, pp.284-298. ⟨10.1016/j.future.2017.01.012⟩
	hal-00850782v1 Journal articles Christophe Pradal, Frédéric Boudon, Christophe Nouguier, Jérôme Chopard, Christophe Godin. PlantGL: A Python-based geometric library for 3D plant modelling at different scales Graphical Models, Elsevier, 2009, 71 (1), 1--21, posted-at = 2008-11-04 14:10:07. ⟨10.1016/j.gmod.2008.10.001⟩
	hal-00790635v1 Conference papers Jérôme Chopard, Christophe Pradal, Daniel Barbeau, Thomas Cokelaer, Christophe Godin. Scientific workflow for reusing plant/FSPM models MODSIM2011. 19th International Congress on Modelling and Simulation, Modelling and Simulation Society of Australia and New Zealand, Dec 2011, Perth, Australia. pp.968-974
	hal-00831831v1 Conference papers Jérôme Chopard, Christophe Godin, Jan Traas. Towards a formal expression of morphogenesis: a mechanics based integration of cell growth at tissue scale Proceedings of the 7th International Workshop on Information Processing in Cells and Tissues, 2007, Oxford, United Kingdom. pp.387-399
	hal-00831785v1 Conference papers Christophe Pradal, Thomas Cokelaer, Daniel Barbeau, Eric Moscardi, Jérôme Chopard et al. Modeling Strategies Using Visual Programming in OpenAlea 6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.101-103
	hal-01253627v1 Poster communications Christian Fournier, Simon Artzet, Jérôme Chopard, Michael Mielewczik, Nicolas Brichet et al. Phenomenal: a software framework for model-assisted analysis of high throughput plant phenotyping data IAMPS 2015 (International Workshop on Image Analysis Methods for the Plant Sciences), Sep 2015, Louvain-la-Neuve, Belgium
	hal-00831791v1 Conference papers Jérôme Chopard, Christophe Godin. The role of mechanics in morphogenesis 6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.135-137
	hal-00831832v1 Conference papers Szymon Stoma, Jérôme Chopard, Christophe Godin, Jan Traas. Using mechanics in the modelling of meristem morphogenesis 5th International Workshop on Functional-Structural Plant Models, 2007, Napier, New Zealand. pp.52, 1--4
	hal-03059482v1 Conference papers Fares Belhassine, Damien Fumey, Christophe Pradal, Jérôme Chopard, Evelyne Costes et al. A modelling framework for the simulation of signal transport within 3D structure: application for the simulation of within-tree variability in floral induction in apple trees FSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Hochschule Geisenheim University; University of Hannover, Oct 2020, Hannover / Virtual, Germany. pp.16-17
	hal-00831824v1 Conference papers Samuel Dufour-Kowalski, Christophe Pradal, Nicolas Dones, Pierre Barbier de Reuille, Frédéric Boudon et al. OpenAlea: An open-source platform for the integration of heterogeneous FSPM components FSPM07 - 5th International Workshop on Functional-Structural Plant Models, Nov 2007, Napier, New Zealand. pp.P36:1-2
	hal-01336655v1 Journal articles Christophe Pradal, Simon Artzet, Jérôme Chopard, Dimitri Dupuis, Christian Fournier et al. InfraPhenoGrid: A scientific workflow infrastructure for Plant Phenomics on the Grid Future Generation Computer Systems, Elsevier, 2017, 67, pp.341-353. ⟨10.1016/j.future.2016.06.002⟩
	hal-02788579v1 Preprints, Working Papers, ... Simon Artzet, Tsu Wei Chen, Jérôme Chopard, Nicolas Brichet, Michael Mielewczik et al. Phenomenal: An automatic open source library for 3D shoot architecture reconstruction and analysis for image-based plant phenotyping 2019
	halsde-00258970v1 Journal articles Claude-Eric Parveaud, Jérôme Chopard, Jean Dauzat, Benoît Courbaud, Daniel Auclair. Modelling foliage characteristics in 3D tree crowns: influence on light interception and leaf irradiance Trees - Structure and Function, Springer Verlag, 2008, 22 (1), pp.87-104. ⟨10.1007/s00468-007-0172-9⟩
	hal-01396935v1 Conference papers Tsu-Wei Chen, Christian Fournier, Simon Artzet, Nicolas Brichet, Jérôme Chopard et al. Genetic variability in light-related parameters of maize models revealed by linking 3D-reconstruction of plant architecture with light model and phenotyping platform 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China
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