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hal-01369501v1  Journal articles
Adrien Coulet, Malika Smaïl-Tabbone. Mining Electronic Health Records to Validate Knowledge in Pharmacogenomics
ERCIM News, ERCIM, 2016, ERCIM News 104, Special theme: Tackling Big Data in the Life Sciences, pp.56
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hal-01592802v1  Conference papers
Joël Legrand, Yannick Toussaint, Chedy Raïssi, Adrien Coulet. Tree-LSTM and Cross-Corpus Training for Extracting Biomedical Relationships from Text
DLPM2017 Workshop - 2nd International Workshop on Deep Learning for Precision Medicine, Sep 2017, Skopje, Macedonia
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hal-02493067v1  Conference papers
Pierre Monnin, Miguel Couceiro, Amedeo Napoli, Adrien Coulet. Knowledge-Based Matching of $n$-ary Tuples
ICCS 2020 - 25th International Conference on Conceptual Structures, Sep 2020, Bolzano / Virtual, Italy. pp.48-56, ⟨10.1007/978-3-030-57855-8_4⟩
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hal-02913224v1  Conference papers
Pierre Monnin, Emmanuel Bresso, Miguel Couceiro, Malika Smaïl-Tabbone, Amedeo Napoli et al.  Tackling scalability issues in mining path patterns from knowledge graphs: a preliminary study
ALGOS 2020 - 1st International Conference on Algebras, Graphs and Ordered Sets, Aug 2020, Nancy, France
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hal-00903450v1  Conference papers
Mehwish Alam, Melisachew Wudage Chekol, Adrien Coulet, Amedeo Napoli, Malika Smaïl-Tabbone. Lattice Based Data Access (LBDA): An Approach for Organizing and Accessing Linked Open Data in Biology
DMoLD'13 - Data Mining on Linked Data Workshop (ECML/PKDD, 2013), Sep 2013, Prague, Czech Republic
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tel-01748450v2  Theses
Adrien Coulet. Construction et utilisation d'une base de connaissances pharmacogénomique pour l'intégration de données et la découverte de connaissances
Interface homme-machine [cs.HC]. Université Henri Poincaré - Nancy 1, 2008. Français. ⟨NNT : 2008NAN10047⟩
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hal-01955262v1  Preprints, Working Papers, ...
Pierre Monnin, Amedeo Napoli, Adrien Coulet. Data-Interlinking: the Seed of Knowledge Reconciliation in Pharmacogenomics
2018
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hal-01671454v2  Poster communications
Pierre Monnin, Amedeo Napoli, Adrien Coulet. Discovering Subsumption Axioms with Concept Annotation
BDA 2017 - 33ème Conférence sur la Gestion de Données — Principes, Technologies et Applications, Nov 2017, Nancy, France. Gestion de Données — Principes, Technologies et Applications (BDA 2017)
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hal-02155546v1  Conference papers
Pierre Monnin, Chedy Raïssi, Amedeo Napoli, Adrien Coulet. Knowledge Reconciliation with Graph Convolutional Networks: Preliminary Results
DL4KG2019 - Workshop on Deep Learning for Knowledge Graphs, Jun 2019, Portoroz, Slovenia
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hal-01858391v1  Conference papers
Pierre Monnin, Amedeo Napoli, Adrien Coulet. Combining Concept Annotation and Pattern Structures for Guiding Ontology Mapping
FCA4AI@IJCAI2018 - 6th International Workshop "What can FCA do for Artificial Intelligence?", Jul 2018, Stockholm, Sweden
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hal-01869071v1  Conference papers
Joël Legrand, Yannick Toussaint, Chedy Raïssi, Adrien Coulet. Syntax-based Transfer Learning for the Task of Biomedical Relation Extraction
LOUHI 2018 - The Ninth International Workshop on Health Text Mining and Information Analysis, Oct 2018, Brussels, Belgium
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hal-02388730v1  Conference papers
Stephen Pfohl, Ben Marafino, Adrien Coulet, Fatima Rodriguez, Latha Palaniappan et al.  Creating Fair Models of Atherosclerotic Cardiovascular Disease Risk
AIES '19 - Proceedings of the 2019 AAAI/ACM Conference on AI, Ethics, and Society, Jan 2019, Honolulu, United States. pp.271-278, ⟨10.1145/3306618.3314278⟩
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hal-01901566v1  Journal articles
Adrien Coulet, Nigam Shah, Maxime Wack, Mohammad Chawki, Nicolas Jay et al.  Predicting the need for a reduced drug dose, at first prescription
Scientific Reports, Nature Publishing Group, 2018, 8 (1), ⟨10.1038/s41598-018-33980-0⟩
hal-00752101v1  Journal articles
Yi Liu, Adrien Coulet, Paea Lependu, Nigam H Shah. Using ontology-based annotation to profile disease research
Journal of the American Medical Informatics Association, BMJ Publishing Group, 2012, 19 (e1), pp.e177-e186. ⟨10.1136/amiajnl-2011-000631⟩
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hal-00880643v1  Conference papers
Adrien Coulet, Florent Domenach, Mehdi Kaytoue, Amedeo Napoli. Using Pattern Structures for Analyzing Ontology-Based Annotations of Biomedical Data
International Conference on Formal Concept Analysis, May 2013, Dresden, Germany
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hal-01184655v1  Conference papers
Mohsen Hassan, Olfa Makkaoui, Adrien Coulet, Yannick Toussaint. Extracting Disease-Symptom Relationships by Learning Syntactic Patterns from Dependency Graphs
BioNLP 15, Association for Computational Linguistics, Jul 2015, Beijing, China. pp.184
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hal-01593184v2  Conference papers
Pierre Monnin, Clement Jonquet, Joël Legrand, Amedeo Napoli, Adrien Coulet. PGxO: A very lite ontology to reconcile pharmacogenomic knowledge units
Methods, tools & platforms for Personalized Medicine in the Big Data Era, Oct 2017, Palermo, Italy. ⟨10.7287/peerj.preprints.3140v1⟩
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tel-02429926v2  Habilitation à diriger des recherches
Adrien Coulet. Mises en correspondances de données, textes et connaissances pour la découverte de connaissances biomédicales
Base de données [cs.DB]. Université de Lorraine, 2019
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hal-01511909v1  Conference papers
Pierre Monnin, Mario Lezoche, Amedeo Napoli, Adrien Coulet. Using formal concept analysis for checking the structure of an ontology in LOD: the example of DBpedia
23rd International Symposium on Methodologies for Intelligent Systems, ISMIS 2017, Warsaw university of technology, Jun 2017, Warsaw, Poland. pp.674-683, ⟨10.1007/978-3-319-60438-1_66⟩
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hal-00922392v1  Conference papers
Adrien Coulet, Florent Domenach, Mehdi Kaytoue, Amedeo Napoli. Using pattern structures for analyzing ontology-based annotations of biomedical data
Septièmes Journées d'Intelligence Artificielle Fondamentale, Jun 2013, Aix-en-Provence, France. pp.97--106
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hal-00760993v1  Conference papers
Mehwish Alam, Adrien Coulet, Amedeo Napoli, Malika Smaïl-Tabbone. Formal Concept Analysis Applied to Transcriptomic Data
What can FCA do for Artificial Intelligence (FCA4AI) (ECAI 2012), Aug 2012, Montpellier, France
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hal-00761003v1  Conference papers
Mehwish Alam, Adrien Coulet, Amedeo Napoli, Malika Smaïl-Tabbone. Formal Concept Analysis Applied to Transcriptomic Data
The Ninth International Conference on Concept Lattices and Their Applications - CLA 2012, Oct 2012, Fuengirola (Málaga), Spain
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hal-02103899v1  Journal articles
Pierre Monnin, Joël Legrand, Graziella Husson, Patrice Ringot, Andon Tchechmedjiev et al.  PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison
BMC Bioinformatics, BioMed Central, 2019, 20 (S4), ⟨10.1186/s12859-019-2693-9⟩
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hal-01925471v1  Conference papers
Gabin Personeni, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Philippe Jonveaux, Céline Bonnet et al.  Cooperation of bio-ontologies for the classification of genetic intellectual disabilities : a diseasome approach
Proceedings of the 11th International Conference on Semantic Web Applications and Tools for Healthcare and Life Sciences (SWAT4HCLS 2018), Dec 2018, Antwerp, Belgium
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hal-01872312v1  Conference papers
Gabin Personeni, Emmanuel Bresso, Marie-Dominique Devignes, Michel Dumontier, Malika Smaïl-Tabbone et al.  Découverte d'associations entre Evénements Indésirables Médicamenteux par les structures de patrons et les ontologies
Journée I.A. et Santé, Jul 2018, Nancy, France
inria-00338677v1  Conference papers
Adrien Coulet, Malika Smail-Tabbone, Amedeo Napoli, Marie-Dominique Devignes. Ontology Refinement through Role Assertion Analysis: Example in Pharmacogenomics
21st International Workshop on Description Logics - DL2008, May 2008, Dresden, Germany
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inria-00080156v1  Conference papers
Adrien Coulet, Marie-Dominique Devignes, Malika Smaïl-Tabbone. Extraction de données pharmacogénomiques à partir d'études cliniques : problématique
Deuxième atelier sur la "Fouille de données complexes dans un processus d'extraction des connaissances", Jan 2005, Paris/France
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