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hal-02141853v2  Conference papers
Hua-Ting YaoCedric ChauveMireille RegnierYann Ponty. Exponentially few RNA structures are designable
ACM-BCB 2019 - 10th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics, Sep 2019, Niagara-Falls, United States. pp.289-298, ⟨10.1145/3307339.3342163⟩
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hal-00666399v2  Conference papers
Jérémie Du BoisberrangerDanièle GardyYann Ponty. The weighted words collector
AOFA - 23rd International Meeting on Probabilistic, Combinatorial and Asymptotic Methods for the Analysis of Algorithms - 2012, Nicolas, Broutin (INRIA, France) and Luc, Devroye (McGill, Canada), Jun 2012, Montreal, Canada. pp.243--264
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hal-00708580v2  Conference papers
Philippe RinaudoYann PontyDominique BarthAlain Denise. Tree decomposition and parameterized algorithms for RNA structure-sequence alignment including tertiary interactions and pseudoknots
WABI - 12th Workshop on Algorithms in Bioinformatics - 2012, University of Ljubljana, Sep 2012, Ljubljana, Slovenia
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inria-00543150v1  Conference papers
Danièle GardyYann Ponty. Weighted random generation of context-free languages: Analysis of collisions in random urn occupancy models
GASCOM - 8th conference on random generation of combinatorial structures - 2010, LACIM, UQAM, Sep 2010, Montréal, Canada. 14pp
hal-00712557v1  Conference papers
Stefan JanssenLoïc PaulevéYann PontyBalaji RamanMatthias Zytnicki. Can Probabilistic Model Checking Explore Ribo-Nucleic Acid Folding Space?
IWBDA - 4th International Workshop on Bio-Design Automation - 2012, Jun 2012, San Francisco, United States
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hal-01332469v1  Conference papers
Afaf SaaidiDelphine AlloucheBruno SargueilYann Ponty. Towards structural models for the Ebola UTR regions using experimental SHAPE probing data
JOBIM - Journées Ouvertes en Biologie, Informatique et Mathématiques - 2016, Jun 2016, Lyon, France
hal-01534587v1  Conference papers
Afaf SaaidiYann PontyBruno Sargueil. An integrative approach for predicting the RNA secondary structure for the HIV–1 Gag UTR using probing data
JOBIM - Journées Ouvertes en Biologie, Informatique et Mathématiques - 2017, Jul 2017, Lille, France. pp.102
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hal-01558227v1  Poster communications
Afaf SaaidiDelphine AlloucheYann PontyBruno SargueilMireille Regnier. Computational methods for comparing and integrating multiple probing assays to predict RNA secondary structure
Doctorial journey Interface, Ecole polytechnique, Palaiseau, Nov 2016, Palaiseau, France. 10
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hal-01079893v1  Book sections
Yann PontyFabrice Leclerc. Drawing and Editing the Secondary Structure(s) of RNA.
Ernesto Picardi. RNA Bioinformatics, 1269, Springer New York, pp.63-100, 2015, Methods in Molecular Biology, 978-1-4939-2290-1. ⟨10.1007/978-1-4939-2291-8_5⟩
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hal-01332642v1  Conference papers
Wei Wang​Matthieu Barba​Philippe Rinaudo​Alain DeniseYann Ponty. Homology ­modeling of complex structural RNAs
JOBIM - Journées Ouvertes en Biologie, Informatique et Mathématiques - 2016, Jun 2016, Lyon, France
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hal-00585647v1  Conference papers
Stefan JanssenYann PontyBalaji RamanSaad SheikhJean-Marc Steyaert et al.  Investigating the RFAM paradox: The pseudoknot explanation
Fifth Indo-French Bioinformatics Meeting, Mar 2011, Hyderabad, India
hal-00723351v1  Conference papers
Yann Ponty. Visualizing 2D & 3D Structures of RNA
VIZBI - 3rd international meeting on Visualizing Biological Data - 2012, Jim, Procter (U-Dundee, Scotland) and Sean O'Donoghue (CMIS, Australia), Mar 2012, Heidelberg, Germany
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hal-00450763v4  Conference papers
Olivier BodiniYann Ponty. Multi-dimensional Boltzmann Sampling of Languages
21st International Meeting on Probabilistic, Combinatorial, and Asymptotic Methods in the Analysis of Algorithms (AofA'10), Jun 2010, Vienna, Austria. pp.49-64
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hal-01077506v3  Book sections
Yann Ponty. Bio-algorithmique des ARN : petite promenade aux interfaces
Eric Sopena. 1024 - Bulletin de la société informatique de France, 4, SIF, pp.23--53, 2014
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hal-01104587v3  Conference papers
Ashok RajaramanCedric ChauveYann Ponty. Assessing the robustness of parsimonious predictions for gene neighborhoods from reconciled phylogenies
ISBRA - 11th International Symposium on Bioinformatics Research and Applications - 2015, Jun 2015, Norfolk, Virginia, United States. pp.260--271, ⟨10.1007/978-3-319-19048-8_22⟩
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hal-00766781v1  Conference papers
Vladimir ReinharzYann PontyJérôme Waldispühl. A linear inside-outside algorithm for correcting sequencing errors in structured RNA sequences
RECOMB - 17th Annual International Conference on Research in Computational Molecular Biology - 2013, Apr 2013, Beijing, China
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inria-00619921v1  Journal articles
Peter CloteYann PontyJean-Marc Steyaert. Expected distance between terminal nucleotides of RNA secondary structures.
Journal of Mathematical Biology, Springer Verlag (Germany), 2012, 65 (3), pp.581-99. ⟨10.1007/s00285-011-0467-8⟩
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hal-00811607v1  Conference papers
Vladimir ReinharzYann PontyJérôme Waldispühl. A weighted sampling algorithm for the design of RNA sequences with targeted secondary structure and nucleotides distribution
ISMB/ECCB - 21st Annual international conference on Intelligent Systems for Molecular Biology/12th European Conference on Computational Biology - 2013, Jul 2013, Berlin, Germany
hal-01071417v1  Directions of work or proceedings
Fabrice JossinetYann PontyJérôme Waldispühl. Proceedings of the 1st workshop on Computational Methods for Structural RNAs
Jossinet, Fabrice; Ponty, Yann; Waldispühl, Jérôme. France. McGill University, pp.76, 2014, 978-2-9550187-0-5. ⟨10.15455/CMSR.2014.0000⟩
hal-01569852v1  Conference papers
Yann Ponty. RNA Bioinformatics and ensemble dynamic programming
5th biennial Canadian Discrete and Algorithmic Mathematics Conference - CanaDAM 2015, Jun 2015, Saskatoon, Canada