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hal-02424696v1  Conference papers
Emmanuel MoebelCharles Kervrann. 3D ConvNets improve macromolecule localization in 3D cellular cryo-electron tomograms
Quantitative BioImaging (QBI) Conference, Jan 2019, Rennes, France
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hal-01471074v1  Journal articles
Guillaume MadelaineElisa TonelloCédric LhoussaineJoachim Niehren. Simplification of Reaction Networks, Confluence and Elementary Modes
Computation, MDPI, 2017, Multiscale and Hybrid Modeling of the Living Systems
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hal-01168038v1  Conference papers
Guillaume MadelaineCédric LhoussaineJoachim Niehren. Structural simplification of chemical reaction networks preserving deterministic semantics
Computational Methods in Systems Biology (CMSB), Jérémie BOURDON; Olivier ROUX, Sep 2015, Nantes, France. pp.133-144
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hal-00762620v1  Journal articles
Sara BerthoumieuxMatteo BrilliDaniel KahnHidde de JongEugenio Cinquemani. On the identifiability of metabolic network models.
Journal of Mathematical Biology, Springer Verlag (Germany), 2013, 67 (6-7), pp.1795-832. ⟨10.1007/s00285-012-0614-x⟩
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tel-01549014v1  Theses
Diana Stefan. Structural and parametric identification of bacterial regulatory networks
Artificial Intelligence [cs.AI]. Université de Grenoble, 2014. English. ⟨NNT : 2014GRENM019⟩
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tel-01176554v1  Theses
Deepesh Agarwal. Topics in mass spectrometry based structure determination
Other [cs.OH]. Université Nice Sophia Antipolis, 2015. English. ⟨NNT : 2015NICE4048⟩
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hal-01317448v1  Book sections
Anisah GhoorahMarie-Dominique MorchMalika Smaïl-TabboneDavid Ritchie. Classification and Exploration of 3D Protein Domain Interactions Using Kbdock
O. Carugo; F. Eisenhaber. Data Mining Techniques for the Life Sciences, 1415, Springer Science+Business Media New York, pp.91-105, 2016, Methods in Molecular Biology, 978-1-4939-3570-3. ⟨10.1007/978-1-4939-3572-7_5⟩
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hal-01245401v2  Journal articles
Deepesh AgarwalChristelle CaillouetDavid CoudertFrédéric Cazals. Unveiling Contacts within Macro-molecular assemblies by solving Minimum Weight Connectivity Inference Problems
Molecular and Cellular Proteomics, American Society for Biochemistry and Molecular Biology, 2015, 14, pp.2274-2284. ⟨10.1074/mcp.M114.047779⟩