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hal-00583530v1  Journal articles
Bernard Bonaiti, Valérie Bonadona, Hervé Perdry, Nadine Andrieu, Catherine Bonaïti-Pellié. Estimating penetrance from multiple case families with predisposing mutations: Extension of the "genotype-restricted likelihood" (GRL) method
European Journal of Human Genetics, Nature Publishing Group, 2010, 19 (2), pp.173 - 179. ⟨10.1038/ejhg.2010.158⟩
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hal-01888999v1  Poster communications
Qassim Esmaeel, Yoann Dufresne, Areski Flissi, Maude Pupin, Philippe Jacques et al.  Norine, Florine, s2m : powerful bioinformatics resource and tools for the discovery of novel nonribosomal peptides, natural metabolites with versatile activities
FEMS 2017 - 7th congress of Federation of European Microbiology societies, Jul 2017, Valencia, Spain
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hal-01153704v1  Journal articles
François Coutte, Joachim Niehren, Debarun Dhali, Mathias John, Cristian Versari et al.  Modeling Leucine’s Metabolic Pathway and Knockout Prediction Improving the Production of Surfactin, a Biosurfactant from Bacillus Subtilis
Biotechnology Journal, Wiley-VCH Verlag, 2015, 10 (8), pp.1216-34. ⟨10.1002/biot.201400541⟩
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hal-01398944v1  Journal articles
Qassim Esmaeel, Maude Pupin, Nam Phuong Kieu, Gabrielle Chataigné, Max Béchet et al.  Burkholderia genome mining for nonribosomal peptide synthetases reveals a great potential for novel siderophores and lipopeptides synthesis
MicrobiologyOpen, Wiley, 2016, 5 (3), pp.512 - 526. ⟨10.1002/mbo3.347⟩
hal-01398960v1  Book sections
Valérie Leclère, Tilmann Weber, Philippe Jacques, Maude Pupin. Bioinformatics Tools for the Discovery of New Nonribosomal Peptides
Bradley S. Evans. Nonribosomal Peptide and Polyketide Biosynthesis, 1401, Humana Press, pp.209-232, 2016, Methods in Molecular Biology, 978-1-4939-3373-0 978-1-4939-3375-4. ⟨10.1007/978-1-4939-3375-4_14⟩
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hal-01250614v1  Journal articles
Maude Pupin, Qassim Esmaeel, Areski Flissi, Yoann Dufresne, Philippe Jacques et al.  Norine: a powerful resource for novel nonribosomal peptide discovery
Synthetic and Systems Biotechnology, KeAi, 2015, ⟨10.1016/j.synbio.2015.11.001⟩
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hal-01239198v3  Journal articles
Joachim Niehren, Cristian Versari, Mathias John, François Coutte, Philippe Jacques. Predicting Changes of Reaction Networks with Partial Kinetic Information
BioSystems, Elsevier, 2016, Special Issue of CMSB 2015, 149, pp.113-124. ⟨10.1016/j.biosystems.2016.09.003⟩
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hal-01163391v2  Conference papers
Joachim Niehren, Mathias John, Cristian Versari, François Coutte, Philippe Jacques. Qualitative Reasoning about Reaction Networks with Partial Kinetic Information
Computational Methods for Systems Biology, Sep 2015, Nantes, France. pp.157-169
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inria-00435791v1  Journal articles
Gaël Le Trionnaire, F. Francis, S. Jaubert-Possamai, J. Bonhomme, E. de Pauw et al.  Transcriptomic and proteomic analyses of seasonal photoperiodism in the pea aphid.
BMC Genomics, BioMed Central, 2009, 10, pp.456. ⟨10.1186/1471-2164-10-456⟩
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hal-00824527v1  Journal articles
Andréane Rabatel, Gérard Febvay, Karen Gaget, Marie-Gabrielle Duport, Patrice Baa-Puyoulet et al.  Tyrosine pathway regulation is host-mediated in the pea aphid symbiosis during late embryonic and early larval development
BMC Genomics, BioMed Central, 2013, 14 (1), pp.235. ⟨10.1186/1471-2164-14-235⟩
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hal-01814687v1  Journal articles
Roland Akakpo, Nora Scarcelli, Hana Chaïr, Alexandre Dansi, Gustave Djedatin et al.  Molecular basis of African yam domestication: analyses of selection point to root development, starch biosynthesis, and photosynthesis related genes
BMC Genomics, BioMed Central, 2017, 18 (1), ⟨10.1186/s12864-017-4143-2⟩
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hal-00723049v1  Journal articles
Fabrice Legeai, Sébastien Malpel, Nicolas Montagné, Christelle Monsempes, François Cousserans et al.  An Expressed Sequence Tag collection from the male antennae of the Noctuid moth Spodoptera littoralis: a resource for olfactory and pheromone detection research.
BMC Genomics, BioMed Central, 2011, 12 (86), pp.86. ⟨10.1186/1471-2164-12-86⟩
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hal-00632959v1  Journal articles
Lilia Brinza, Federica Calevro, Marie-Gabrielle Duport, Karen Gaget, Christian Gautier et al.  Structure and dynamics of the operon map of Buchnera aphidicola sp. strain APS.
BMC Genomics, BioMed Central, 2010, 11 (666), pp.666. ⟨10.1186/1471-2164-11-666⟩
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hal-02378470v1  Journal articles
Philippe Marullo, Pascal Durrens, Emilien Peltier, Margaux Bernard, Chantal Mansour et al.  Natural allelic variations of Saccharomyces cerevisiae impact stuck fermentation due to the combined effect of ethanol and temperature; a QTL-mapping study
BMC Genomics, BioMed Central, 2019, 20 (1), pp.1-17. ⟨10.1186/s12864-019-5959-8⟩
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lirmm-01612258v1  Journal articles
Xavier Argout, Guillaume Martin, Gaetan Droc, Olivier Fouet, Karine Labadie et al.  The cacao Criollo genome v2.0: an improved version of the genome for genetic and functional genomic studies
BMC Genomics, BioMed Central, 2017, 18 (1), pp.730-739. ⟨10.1186/s12864-017-4120-9⟩
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hal-01058982v1  Journal articles
Fabrice Legeai, Sylvie Gimenez, Bernard Duvic, Jean-Michel Escoubas, Anne-Sophie Gosselin-Grenet et al.  Establishment and analysis of a reference transcriptome for Spodoptera frugiperda
BMC Genomics, BioMed Central, 2014, 15 (1), pp.704. ⟨10.1186/1471-2164-15-704⟩
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inserm-00482283v1  Journal articles
Fabrice Legeai, Guillaume Rizk, Thomas Walsh, Owain Edwards, Karl Gordon et al.  Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum.
BMC Genomics, BioMed Central, 2010, 11 (1), pp.281. ⟨10.1186/1471-2164-11-281⟩
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hal-01142363v1  Journal articles
Valentin Loux, Mahendra Mariadassou, Sintia Almeida, Hélène Chiapello, Amal Hammani et al.  Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii
BMC Genomics, BioMed Central, 2015, 16 (1), pp.35. ⟨10.1186/s12864-015-1467-7⟩
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hal-00784428v1  Journal articles
Andrey Kislyuk, Bart Haegeman, Nicholas Bergman, Joshua Weitz. Genomic fluidity: an integrative view of gene diversity within microbial populations
BMC Genomics, BioMed Central, 2011, 12, pp.32. ⟨10.1186/1471-2164-12-32⟩
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hal-01275696v1  Journal articles
Gilles Boutet, Susete Alves Carvalho, M Falque, Pierre Peterlongo, Emeline Lhuillier et al.  SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population
BMC Genomics, BioMed Central, 2016, 17 (1), pp.121. ⟨10.1186/s12864-016-2447-2⟩
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inserm-00871184v1  Journal articles
Toni Gabaldón, Tiphaine Martin, Marina Marcet-Houben, Pascal Durrens, Monique Bolotin-Fukuhara et al.  Comparative genomics of emerging pathogens in the Candida glabrata clade.
BMC Genomics, BioMed Central, 2013, 14 (1), pp.623. ⟨10.1186/1471-2164-14-623⟩
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hal-01449139v1  Journal articles
F. Masson, Y. Moné, A. Vigneron, Agnès Vallier, Nicolas Parisot et al.  Weevil endosymbiont dynamics is associated with a clamping of immunity
BMC Genomics, BioMed Central, 2015, 16 (1), pp.819. ⟨10.1186/s12864-015-2048-5⟩
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